Sitio de BioInformatica, CIGB, Cuba

Departamento de Bioinformática
Dirección de Informática y Comunicaciones
CIGB, Habana, Cuba

Centro de Ingeniería Genética y Biotecnología
 Publicaciones | Presentaciones en Eventos  

Publicaciones

Trujillo LE, Sotolongo M, Menéndez C, Ochagavía ME, Coll Y, Hernández I, Borrás O, Thomma BPHJ, Vera P, Hernández L Different stress signals determine the expression pattern of sugarcane SodERF3, a novel sugarcane Ethylene Responsive Factor (ERF) enhances salt and drought tolerance when over-expressed in tobacco plants, Plant and Cell Physiology , 2008. Abstract

Lee HJ, Manke T, Bringas R, Vingron M. Prioritization of gene regulatory interactions from large-scale modules in yeast, BMC Bioinformatics , 9: 32, 2008. Full text

Junco JA, Peschke P, Zuna I, Ehemannd V, Fuentes F, Bover E, Pimentel E, Basulto R, Reyes O, Calzada L, Castro MD, Arteaga N, López Y, Garay H, Hernández H, Bringas R, Guillén GE. Immunotherapy of prostate cancer in a murine model using a novel GnRH based vaccine candidate, Vaccine, 25: 8460-68, 2007. Abstract

Ferrer A, Nazábal M, Companioni O, Fernandez de Cossio ME, Camacho H, Cintado A, Benítez J, Casalvilla R, Sautié M, Villareal A, Díaz T, Marrero A, Fernández-de-Cossío J, Hodelin A, Leal L, Ballester L, Novoa LI, Middleton D, Dueñas M. HLA class I polymorphism in the Cuban population, Human Immunology , 68 (11): 918-27, 2007. Abstract

Bringas R. Book Review: Microcompetition with foreign DNA and origin of chronic disease, by Hanan Polansky, Biotecnologia Aplicada , 23 (1): 52, 2006. Full text

Sánchez A, González LJ, Betancourt L, Gil J, Besada V, Fernandez-de-Cossio J, Rodriguez-Ulloa A, Marrero K, Alvarez F, Fando F, Padrón G. Selective isolation of multiple positively-charged peptides for 2DE-free quantitative proteomics, Proteomics, 6 (16): 4444-55, 2006. Abstract

Sánchez A., González LJ, Ramos Y, Betancourt L, Gil J, Besada V, Fernandez-de-Cossio J, Alvarez F, Padrón G. Selective isolation of lysine-free tryptic peptides delimited by arginine residues: A new tool for proteome analysis, J Proteome Res, 5: 1204-1213, 2006. Abstract

Betancourt L, Gil J, Besada V, Gonzalez LJ, Fernandez-de-Cossio J, Garcia L, Pajon R,Sanchez A, Alvarez F, Padron G. SCAPE: a new tool for the Selective CApture of PEptides in protein identification, J Proteome Res, 4(2): 491-496, 2005. Abstract

Fernandez-de-Cossio J, Gonzalez LJ, Satomi Y, Betancourt L, Ramos Y, Huerta V, Besada V, Padron G, Minamino N, Takao T Automated interpretation of mass spectra of complex mixtures by matching of isotope peak distributions, Rapid Commun Mass Spectrom, 18(20): 2465-72, 2004. Abstract

Fernández-de-Cossío J., Gonzalez L.J., Satomi Y., Betancourt L., Ramos Y., Huerta V., Amaro A., Besada V., Padron G., Minamino N.,Takao T. Isotopica: a tool for the calculation and viewing of complex isotopic envelopes, Nucl. Acids. Res., 32: w674-w678, 2004. Full Text

Ochagavía M.E. and Wodak, S. Progressive Combinatorial Algorithm for Multiple Structural Alignments: Application to Distantly Related Proteins, Proteins: Structure, Function, and Genetics, 55: 436-454, 2004. Abstract

Manke T., Bringas R., Vingron M. Correlating Protein-DNA and Protein-Protein Interaction Networks, Journal of Molecular Biology, 333: 75-85, 2003. Abstract

Ochagavía M.E., Richelle J. and Wodak S.J. Advanced pairwise structure alignment of proteins and analysis of conformational changes, Bioinformatics, 18: 637-640, 2002. Abstract

García C. A., Pérez G., Peña C., Ortega M., Quintana M. , Miranda J. Estrategia para el establecimiento de las especificaciones de calidad en el Centro de Ingeniería Genética y Biotecnología de La Habana, Cuba, Biotecnologia Aplicada , 18: 211-221, 2001. Full text

Fernández-de-Cossío J., Gonzales J. , Satomi Y., Besada V., Betancourt L., G. Padrón, Shimonishi Y. and Takao T. Automated Interpretation of Low-energy Collision-Induced Dissociation Spectra by ‘SeqMS’, a software Aid for De Novo Sequencing by Tandem Mass Spectrometry, Electrophoresis, 21: 1694-1699, 2000. Abstract

Miranda J., Lopez N. Aplicación Isapi para la consulta a bases de datos, El profesional de la información, 8: 16-17, 1999.

Takao T., Mo W., Fernández-de-Cossío J. , Gonzalez J. , Besada V., Padron G., Shimonishi Y. Accurate peptide sequencing by mass spectrometry, Peptide Science - Present and Future, Kluwer Academic Publishers, Dordrecht: 146-151, 1999.

Metzger K. and Bringas R. Proline-138 is essential for the assembly of the Hepatitis B core protein, Journal of General Virology, 79: 587-590, 1998. Full paper

Fernández-de-Cossío J., Gonzales J., Betancourt L., Besada V., Padrón G., Shimonishi Y. and Takao T. Automated Interpretation of High-energy Collision-Induced Dissociation Spectra of Singly Protonated Peptides by ‘SeqMS’, a software Aid for De Novo Sequencing by Tandem Mass Spectrometry, Rapid Commun Mass Spectrom, 12: 1867-1878, 1998. Abstract

Bringas R. Hepatitis B core protein folding and assembly. A new model proposal, J. Struct. Biol , 118: 189-96, 1997. Abstract

Berlanga J., Lodos J., Labarta V., Merino N., Gonzales T., Hayes O., Puentes P., Mulet J. and Lopez-Saura P. The effect of the epidermal growth factor treatment schedule on the healing of full-thickness wounds in pigs, Biotecnología Aplicada, 14: 163-168, 1997.

Boutonnet N. S., Rooman M., Ochagavia M., Richelle J., and Wodak S. Optimal protein structure alignment by multiple linkage clustering: application to distantly related proteins, Journal of Protein Engineering, 8: 647-652, 1995. Abstract

Bringas R., and Fernández J. A lipoamide dehydrogenase from Neisseria Meningitidis has a lipoyl domain, Proteins, Structure, function and Genetics, 21: 303-306, 1995. Abstract

Fernández-de-Cossío J., Gonzalez J., Besada V. A Computer Program to Aid the Sequencing of Peptides in Collision Activated Decomposition Experiments, CABIOS, 11, 1995. Abstract

Fernández-de-Cossío J., Gonzalez J., Besada V. A program to aid the interpretation of the MS/MS spectra of peptides, Biotecnología Aplicada, 12, 1995.

Ferrero J., Ochagavia M., Aguilera A., and Lopez-Saura P. Titulación de la actividad antiviral de interferón utilizando el sistema de equipos Suma, Biotecnología Aplicada, 11: 34-42, 1994.

Bringas R, Ricardo R, Fernández-de-Cossío J, Ochagavia ME, Suarez A, Rodríguez R. BioSOS: A program package for the analysis of biological sequences in the microcomputer, Biotecnología Aplicada, 9: 180-185, 1992.

Ochagavia M. E., V. Jimenez, Fernández-de-Cossío J., Suarez A., Bringas R., Ricardo R. SYNSOS: Paquete de programas de ayuda en el diseño de genes, Biotecnología Aplicada, 9: 78-82, 1992.

Ochagavia M., Ricardo R., Fernández-de-Cossío J., Bringas R. PROFALIGN: Una representación gráfica del alineamiento de dos secuencias biológicas, , Biotecnología Aplicada, 9, 1992.

Chelvanayagam G., Reich Z., Bringas R., and Argos P. Prediction of protein folding pathways, Journal of Molecular Biology, 227: 901-916, 1992. Abstract

Jiménez V., Guimil R., Ubieta R., Ochagavia M., Silva A., Villegas G., and Herrera L.. Síntesis Químico-Enzimatica del gen de la proinsulina humana, Biotecnología Aplicada, 7: 142-152, 1990.

Campione-Piccardo J., and Bringas R. Probability of error in homology searches using algorithms that pre-screen sequences for perfect matches. Implications in the design of consensus primers for polymerase chain reaction, Proceedings of the first canadian workshop on Bioinformatics: 79-100, 1990.

Cantillo J., Riveron A. M., Katrib M., Bringas R., Perez G., Lopez L. y Valdes F. Utilización de un código binario en el diseño y programación de un SBDR para manipular cadenas de ADN, Memorias del Segundo Seminario Cubano sobre Interferón y Primer Seminario Cubano sobre Biotecnología: 837-845, 1986.

Riveron A. M., Bringas R., Cantillo J., and Baez O. Codificación binaria del ADN restringida por las propiedades de las secuencias de bases. Su uso para la determinar sitios de restricción, Memorias del primer seminario cubano sobre Biotecnología: 846-854, 1986.

Bringas R. and Pérez S. CIBSOFT: Un paquete de programas para el análisis de ácidos nucleicos y proteínas, Interferón y Biotecnología, 3: 225-228, 1986.