Tools

BisoGenet

Bioinformatic tool for searching, visualizing and analizing molecular interactions information around a set of genes/proteins.

 

Isotopica

Calculation and visualization of the isotopic distribution from molecular formulas or the sequence of peptides, proteins, DNA, RNA and carbohydrates.

 

SysBiomics

A web application to access to information stored in SysBiomics database which integrate data on gene, proteins, protein-protein interactions, biological pathways, gene ontology, miRNA-gene silencing relations and more.

Websites of Interest

 

 

 

 

 

 

Next Events

OMICS 2015

International Meeting on Bioinformatics and Omics. Varadero Beach, Cuba. Oct 27-30.

 

BIG DATA in Biomedicine

Big Data in Biomedicine Conference. Standord, CA, USA. Mayo 20-22, 2015.

 

ISMB/ECCB 2015

23rd Annual International Conference on Intelligent Systems for Molecular Biology and the 14th European Conference on Computational Biology at the Convention Center Dublin. Ireland. July 10-14.

 

For Internal Use

Meeting

Miranda J, Vázquez D, Bringas R, Martín A, Bello I. Multivariate Analysis of RT-qPCR data. HeberPAG vs. Interferon Alfa and Gamma treatments. Biotecnología habana 2009. (Poster).

 

Vázquez D, Bello I, Fernández JR, Guillén I, Pedroso S, Miranda J, Martín A, Ochagavia ME, Colarte AB, Díaz T, Palenzuela D. A first approaching to the understanding of the mode of action of a pharmaceutical formulation of Interferons (HeberPAG). Biotecnología habana 2009. (Poster).

 

Guillén I, Palenzuela D, Novoa LI, Dueñas S, Fernández JR, Zhang Z, Hang J, Qu Y, Miranda J, Martín A, Pharmacogenomic study of therapeutic vaccine against hepatitis C infection in phase I of clinical trials. Biotecnología habana 2009. (Poster).

 

 

Miranda J., Sanchez J., Liero H., Bringas R., Martín A., Lauter H. Comparación de metodos discriminantes para la búsqueda de predictores a partir de perfiles de expresión de genes. Presentación Oral. Evento de estadística Cuba- Mexico "CIMAF 2008". ICIMAF. La Habana, Cuba, 2008.

 

Fernandez-de-Cossio J., Ramos Y., González LJ., Sánchez A., Besada V., Betancourt L. and Valdés G. On the assessment of reliability in Target-Decoy strategies. Poster. The Satellite Meeting of Methods in Protein Structural Analysis MPSA . Varadero, Cuba, 2007.

 

Rabasa LC., Martín A., Miranda J., Ochagavía M.E., Fernández-de-Cossío J., Hodelin A., Bringas R. SysBiomics: Integración de bases de datos biológicas bajo el enfoque de Biología de Sistemas. UCIENCIA, 2007.

 

Miranda J., Bringas R., Rabasa LC., Martín A., Ochagavía M.E., Fernández-de-Cossío J., Hodelin A. MetArray: A module for the comparison and integration of microarray data. Poster. Biotecnología Habana 2006. Palacio de las Convenciones. La Habana, Noviembre 2006.

 

Rabasa LC., Martín A., Miranda J., Ochagavía M.E., Fernández-de-Cossío J., Hodelin A., Bringas R. SysBiomics: Database for integration and analysis of omics data. Poster. Biotecnología Habana 2006. Palacio de las Convenciones. La Habana, Noviembre 2006.

 

Ochagavía M.E., Martín A., Rabasa LC., Bringas R., Miranda J., Hodelin A., Fernández-de-Cossío J. A Cytoscape’s plugin for the re-construction, visualization and analysis of biological networks. Poster. Biotecnología Habana 2006. Palacio de las Convenciones. La Habana, Noviembre 2006.

 

Martín A., Bringas R., Rabasa LC., Ochagavía M.E., Miranda J., Fernández-de-Cossío J., Hodelin A. BisoGenet: A new tool for re-construction of Biological Networks. Presentación Oral. Biotecnología Habana 2006. Palacio de las Convenciones. La Habana, Noviembre 2006.

 

Fernández-de-Cossío J., Gonzalez, L.J., Satomi, Y., Gil, J., Sánchez A., Betancourt L., Besada, V., Padrón, G., and Takao, T. Protium: a software for the automatic relative quantification of peptide and proteins in shotgun proteomics experiments. Poster. Biotecnología Habana 2006. Palacio de las Convenciones. La Habana, Noviembre 2006.

 

Hodelin A., Fernández-de-Cossío J., Nazabal M. HLAssig: Web aplicattion for the alleles combinations assignment from SBT determined DNA sequences. Poster. CIGB 3º Internacional Workshop on Genomics. Varadero. Cuba, Noviembre 2006.

 

Fernández-de-Cossío J., Gonzalez, L.J., Satomi, Y., Gil, J., Sánchez A., Betancourt L., Besada, V., Padrón, G., and Takao, T Massive quantification of proteins expression levels by differential isotope labeling in proteomics. Poster. 7th Siena meeting. From genome to proteome: Back to the future 2006. Siena, Italy.

 

Bringas R., Martín A., Rabasa LC., Miranda J., Ochagavía M.E., Hodelin A., Fernández-de-Cossío J. Redes de Genes e interpretación de datos de expresión diferencial. Presentación Oral. III Simposio Internacional de Bioquimica y Biologia Molecular. Habana, Cuba, Octubre 2006.

 

Miranda J. Meta-análisis de datos de expresión de genes: Una aplicación en Cáncer de Próstata. Presentación Oral. I Congreso Internacional de Genética Comunitaria. Palacio de las Convenciones. La Habana, Mayo 2006.

 

Hodelin A. HLassig, aplicación Web para la asignación de alelos por secuencia de ADN . Presentación Oral. I Congreso de Genética Comunitaria. Palacio de las Convenciones. La Habana, Mayo 2006.

 

Miranda J. Análisis de datos de Microarrays. Presentación Oral. Evento de Estadística - Matemática Cuba-México. ICIMAF. La Habana, Marzo 2006.

 

Hodelin A., Fernández-de-Cossío J., Nazabal M. HLAssig: Alleles combinations assignment from DNA sequences. Presentación Oral. CIGB 2nd International Workshop on Genomics Research . Varadero, Noviembre 2005.

 

Bringas R. La Predicción de las Redes de Genes, uno de los Nuevos Retos de la Bioinformática. Conferencia. Informática 2004. La Habana, Cuba, 2004.

 

Fernandez-de-Cossio J., Satomi Y., González L.J., Takao T. Software tools for proteomic analysis. Frontiers of Proteomics, Aims and Perspectives, the Science Council (Biochemistry, Biophysics) of Japan. Poster. 21st Century COE of Biol. Sci./Institute for Proptein Research. Osaka University, November 2004.

 

Bringas R., Manke T., Vingron M. Correlating Protein-DNA and Protein-protein Interactions of Transcription Factors. Poster. RECOMB 2003: Research in Computational Molecular Biology. Berlin, Alemania, 2003. Abstract

 

Ochagavía M.E. and Wodak S.Hierarchical Clustering of Protein Structures by using information of Multiple Structural Alignments. Poster. RECOMB 2003: Research in Computational Molecular Biology. Berlin, Alemania, 2003. Abstract

 

Bringas R., Vingron M. Protein-Protein Interaction Analysis of Transcription Factors and its Use for the Identification of Cooperatively Acting Transcription Factors. Poster. ISMB 2002: Intelligent Systems for Molecular Biology. Edmonton, Canada.

 

Manke T., Bringas R., Vingron M. Identification of transcriptional modules in budding yeast. Poster. ECCB. Paris, Francia, 2003. Abstract

 

Ochagavía M.E. and Wodak S. MALECON: Multiple Protein Structural Alignment by a Step-Wise Multi-Solution Approach that Maximizes the Number of Spatially Equivalent Residues. Poster. ISMB: Intelligent Systems for Molecular Biology. Edmonton, Canada, 2002. Abstract

 

Bringas R. Minería de datos del Genoma Humano. Conferencia. I Taller Nacional de Bioinformática. ISCTN, La Habana, 2002.

 

Fernández-de-Cossío J., Gonzales J., Betancourt L., Besada, V., Shimonishi Y., Padrón, G. and Takao T. Protein Identification by MS-Match, a Software Aid for Cross-Matching between Mass Values & Sequence. The 47th ASMS Conference on Mass Spectrometry. Dallas, Texas. USA., 1999.

 

Takao T., Fernández-de-Cossío J., Gonzales J., Satomi Y., Besada V., Betancourt L., Padrón, G., Shimonishi, Y. Software programs for de novo sequencing and identification of proteins, based on MS data. International Proteome & Proteomics Conference IPPC´99. Chiba, Japan, 1999.

 

Gonzales J., Fernández-de-Cossío J., Padrón, G. Besada, V., Shimonishi, Y. and Takao, T. Automated Interpretation of High-energy Collision-induced Dissociation Spectra of Singly Protonated Peptides by ‘SeqMS’. X12th International Conference on Methods in Protein Structure Analysis. Halkidiki, Greece, 1998.

 

Bringas R. The Hepatitis B core protein model. Biología Molecular del virus de la Hepatitis B. Instituto Pasteur, Paris, Francia, 1997. Abstracts, p. P35

 

Bringas R. Proline 138 is essential for the assembly of the hepatitis B core protein. Biología Molecular del virus de la Hepatitis B. Instituto Pasteur, Paris, Francia, 1997. Abstracts, p. P37

 

Takao T., Fernández-de-Cossío J., González L. J., Shimonishi Y., Padrón G., Besada V. Software for rapid analysis of unknown peptide sequences involving gaps and post-translational modifications by MS. 45th Conference of the ASMS and Allied Topics. Palm Springs, USA, 1997.

 

Fernández-de-Cossío J., Takao T., González L. J., Besada V., Fukuda M. Fukuda H., Padrón G., Shimonishi Y. Automated interpretation of PSD spectra by SEQMS, a software aid for sequencing of peptides. 14th International Mass Spectrometry Conference, IMSC’97. Tampere, Finland, 1997.

 

Takao T., Mo W, Fernández-de-Cossío J., González, L. J., Besada, V. Padrón P., Shimonishi Y. Accurate peptide sequencing by mass spectrometry. 1st International Peptide Symposia IPS’97. Kyoto, Japan, 1997.

 

Besada V., González L. J., Fernandez-de-Cossio J., Betancourt L., Padrón G. Novel procedures for protein sequencing by Mass Spectrometry. Presentación oral. 6th Congreso Internacional Biotecnología Habana´97. Habana, Cuba, 1997.

 

Fernandez-de-Cossio, J., Gonzalez, L. J., Takao, T., Shimonishi, Y., Padrón, G., Besada, V. A software program for the rapid sequence analysis of unknown peptides involving modifications, based on MS/MS data. Poster. 45th Conference of the ASMS and Allied Topics. Palm Springs, USA, 1997.

 

Takao T., Fernandez-de-Cossio J., González L. J., Shimonishi Y., Padrón G., Besada V. Automated interpretation of high-energy CID spectra of peptides by SeqMS, a software aid for sequencing by MS/MS. Poster. 45th Conference of the ASMS and Allied Topics. Palm Springs, USA, 1997.