BisoGenet
BisoGenet is a tool that allows the search of data about molecular interactions and functional relations around a group of genes/proteins. This information is represented in the form of edges that connect the corresponding nodes. The BisoGenet project has several components: integration of data from different sources, construction of gene and protein networks from the integrated information, as well as networks visualization and analysis.
BisoGenet has its own database (SysBiomics) which is the support of the biological information used by this tool. This database compiles and integrates data from multiple public sources that include: general notes about genes and proteins (NCBI, UniProt), functional notes (KEGG, GO), interactions between genes/proteins (DIP, BIND, HPRD), among other informative categories. Access to BisoGenet is granted by a plugin created for Cytoscape, which offers a friendly interface. From this interface, users can introduce their data and specify searching and net building options. With this plugin is possible to display the results and interact with this information through the screens and panels of Cytoscape.
Reference: Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R. A new tool for gene network building, visualization and analysis. BMC Bioinformatics , 10:91 , 2010. [abstrac][full text]
BisoGenet is running in a computer system kindly donated by INSPUR Electronic Information Industry ( Beijing). |
Tools
Bioinformatic tool for searching, visualizing and analizing molecular interactions information around a set of genes/proteins.
Calculation and visualization of the isotopic distribution from molecular formulas or the sequence of peptides, proteins, DNA, RNA and carbohydrates.
Web server for the structural alignment of protein pairs and the analysis of conformational changes.
Websites of Interest
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